PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0092281

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 494aa MW: 55759.8 Da PI: 7.1423

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0092281	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.3	1.2e-35	43	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lp+G++F+Ptd+el+ e+L++kve+k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r RcHm_v2.0_Chr2g0092281 43 LPAGVKFDPTDQELI-EHLEAKVEAKDtkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRR 124 799**********.99***996665443...133333666646******.555666799************** PP NAM 77 a..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l RcHm_v2.0_Chr2g0092281 125 KiqtecdhlqaGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 187 8566666665433778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MNKSNIRSSD LIDAKLEEHQ MCGSKQCPGC GHKLEGKPDW LGLPAGVKFD PTDQELIEHL 60 EAKVEAKDTK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT 120 RKRRKIQTEC DHLQAGGETR WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW 180 VMHQYHLGQH EEEKEGELVV SKIFYQTQPR QCNWSSERTS AASASLTGEG SSDLRRDSGG 240 SGSCTSSKEI IVSHNTHLRD QHDQMSAAAA AQVNVIAQPL TSYNSIDMHQ LKSDHFSFVP 300 FRKSFDEVGI GEASTAREPS IASGTCEELR ERPQLHHVAH DQLLHHHQHQ QQVHHEQQQH 360 QHGQSHHQQQ IATAASFHIS RPSHPISTII SPPPLHHTGT SIILDQDAYH VSRSIMLQNE 420 HFQQQQQQQQ QQQQQQHHKQ MGGRSASGLE ELIMACTSSS NVKEESSSMA NPQEAEWMKY 480 SSFWPDPDNP DHHG

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MNKSNIRSSD LIDAKLEEHQ MCGSKQCPGC GHKLEGKPDW LGLPAGVKFD PTDQELIEHL  60
EAKVEAKDTK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT  120
RKRRKIQTEC DHLQAGGETR WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW  180
VMHQYHLGQH EEEKEGELVV SKIFYQTQPR QCNWSSERTS AASASLTGEG SSDLRRDSGG  240
SGSCTSSKEI IVSHNTHLRD QHDQMSAAAA AQVNVIAQPL TSYNSIDMHQ LKSDHFSFVP  300
FRKSFDEVGI GEASTAREPS IASGTCEELR ERPQLHHVAH DQLLHHHQHQ QQVHHEQQQH  360
QHGQSHHQQQ IATAASFHIS RPSHPISTII SPPPLHHTGT SIILDQDAYH VSRSIMLQNE  420
HFQQQQQQQQ QQQQQQHHKQ MGGRSASGLE ELIMACTSSS NVKEESSSMA NPQEAEWMKY  480
SSFWPDPDNP DHHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-167	NAC family protein