PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0093041

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HRT-like

Protein Properties

Length: 464aa MW: 51693.1 Da PI: 10.0309

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0093041	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	60.9	2e-19	266	296	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dGs+C+++Pv+gRKRC+eHKGmRi RcHm_v2.0_Chr2g0093041 266 ICGVAVGDGSICRKEPVQGRKRCAEHKGMRI 296 8*****************************7 PP
2	HRT-like	47.5	3.1e-15	335	365	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++ +dGs+C+++Pv+gRKR +eH GmRi RcHm_v2.0_Chr2g0093041 335 ICGLAAGDGSICRTPPVQGRKRSAEHRGMRI 365 8*****************************7 PP
3	HRT-like	58.3	1.3e-18	417	447	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGs+C+++P++gRKRC eHKG+Ri RcHm_v2.0_Chr2g0093041 417 ICGFILADGSPCRTEPIQGRKRCDEHKGRRI 447 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MVASDLTVAL QRLKREECKR TKHDPHFSKW KVLVGPCDWE DFSVGKEGAE RYRVHNLPRN 60 ESPGVYELGV AVLRSGLGRG IEADKIVPVY LGQADSVRTR LQQYGRTGAH LGKCCSVGIP 120 SERIRKGPGL FEQILARGYP IVYRWAPMGT KSEALKTESQ LLNTFDYAWN TSINGARRPD 180 DVLQKLKKTS SKPTRFTNIV QRLLPFRQKQ VGIRINSSKL VSTEDKFSDY ADRESRTLTA 240 QVFKFGRSQP RLVLDRSGIT QENTIICGVA VGDGSICRKE PVQGRKRCAE HKGMRITGLI 300 TVRISNSNFD SKCSVISNRE FVSDESGITQ ENTEICGLAA GDGSICRTPP VQGRKRSAEH 360 RGMRIKGSIT VRISDKNVDS KCSVLNNTEL DSHDASNVKY EPVQLPPVHV CESSTSICGF 420 ILADGSPCRT EPIQGRKRCD EHKGRRIQKC KSKSVKEEKV KICA

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MVASDLTVAL QRLKREECKR TKHDPHFSKW KVLVGPCDWE DFSVGKEGAE RYRVHNLPRN  60
ESPGVYELGV AVLRSGLGRG IEADKIVPVY LGQADSVRTR LQQYGRTGAH LGKCCSVGIP  120
SERIRKGPGL FEQILARGYP IVYRWAPMGT KSEALKTESQ LLNTFDYAWN TSINGARRPD  180
DVLQKLKKTS SKPTRFTNIV QRLLPFRQKQ VGIRINSSKL VSTEDKFSDY ADRESRTLTA  240
QVFKFGRSQP RLVLDRSGIT QENTIICGVA VGDGSICRKE PVQGRKRCAE HKGMRITGLI  300
TVRISNSNFD SKCSVISNRE FVSDESGITQ ENTEICGLAA GDGSICRTPP VQGRKRSAEH  360
RGMRIKGSIT VRISDKNVDS KCSVLNNTEL DSHDASNVKY EPVQLPPVHV CESSTSICGF  420
ILADGSPCRT EPIQGRKRCD EHKGRRIQKC KSKSVKEEKV KICA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	7e-99	HRT-like family protein