PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0093271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 343aa    MW: 37784.2 Da    PI: 9.4145
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0093271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19195228134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  RcHm_v2.0_Chr2g0093271 195 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 228
                             *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MAPPFLELST IGSHDHDQDQ YDHHHHDLFN YLEPQSSFSS TTSSLSSPIF LSPAQVQGPI  60
SDHYYREQQN FQFQLLEADH IVSYGGSCDH DQTLGNEGEK GTLISKHGAD DHRNHESRST  120
RAENISVKWM SSKMRIMRKM TNPDQTISSN TTVATNDSTA RVNFSSSHNF EEQKLHPSSP  180
LGTDSSNNTN PIRVCSDCNT TKTPLWRSGP RGPKSLCNAC GIRQRKARRA MAAAAAAANG  240
TTLVVEAAPS MIKTNKVKLK DNKTIPFKKR CHKLTTSPSP RGKSKTKLRY KDFSISSMNQ  300
NSGAAPPTTA TTTTTTTFQR VFPQDEKEAA ILLMALSCGL VQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-27GATA family protein