PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0093421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 598aa MW: 66509.8 Da PI: 7.8194

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0093421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	308	330	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ RcHm_v2.0_Chr2g0093421 308 RLCFKFVSSGSCPRGETCNFQHD 330 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MAPPKILLCG DISGNLKQLF KRVVSVNKSA GPFDALFCVG QFFPDSADQL DEFTGYIEGR 60 AEIPLPTYFI GDYGVGATKF LLAATKDSGN QGFKMDGLKV CSNLYWLKGS GKFTFHGLSV 120 VYLSGLQSSD SQQFGTYSQD DVDALRAIAE DPGIVDFGVT NKAGTSDVPP GASEPFGTDS 180 TVAELAAEIK PRYHVAGTKG MFYAREPYSN VDAVHVTRFI GLAPVGNRDK QKFLHALSPT 240 PASTMSALEI KTKSPNTTLS PYMYIKGTAN AKEGAKRSSD SVSDSDSQYW RYDVSQKRQK 300 HGAGDGNRLC FKFVSSGSCP RGETCNFQHD MDAREQSLRG VCFDFMNKGK CERGTDCKFK 360 HSLQDEGESN SHKRRTGNAT RSTECWFCLS SSKIESHLFI SLGEHYYCAL AKGPLVEDHV 420 LLIPIGHSPN TLSLPSECEM ELGKFQDSLK KFYKKQDKDV VFFEWASKRS THANLQVVPI 480 PSAKAASVQK FFHLAADRFK FKFTTTKFSN SSDGRKSLRT QFDRNFSFFY AELPDGTVLS 540 HLIEESENFL PQFGREVMAG LLNKANRADW RRCTDSKEEE TNMVEKFKSR FEEFDPNN

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MAPPKILLCG DISGNLKQLF KRVVSVNKSA GPFDALFCVG QFFPDSADQL DEFTGYIEGR  60
AEIPLPTYFI GDYGVGATKF LLAATKDSGN QGFKMDGLKV CSNLYWLKGS GKFTFHGLSV  120
VYLSGLQSSD SQQFGTYSQD DVDALRAIAE DPGIVDFGVT NKAGTSDVPP GASEPFGTDS  180
TVAELAAEIK PRYHVAGTKG MFYAREPYSN VDAVHVTRFI GLAPVGNRDK QKFLHALSPT  240
PASTMSALEI KTKSPNTTLS PYMYIKGTAN AKEGAKRSSD SVSDSDSQYW RYDVSQKRQK  300
HGAGDGNRLC FKFVSSGSCP RGETCNFQHD MDAREQSLRG VCFDFMNKGK CERGTDCKFK  360
HSLQDEGESN SHKRRTGNAT RSTECWFCLS SSKIESHLFI SLGEHYYCAL AKGPLVEDHV  420
LLIPIGHSPN TLSLPSECEM ELGKFQDSLK KFYKKQDKDV VFFEWASKRS THANLQVVPI  480
PSAKAASVQK FFHLAADRFK FKFTTTKFSN SSDGRKSLRT QFDRNFSFFY AELPDGTVLS  540
HLIEESENFL PQFGREVMAG LLNKANRADW RRCTDSKEEE TNMVEKFKSR FEEFDPNN