PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0093461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 142aa    MW: 16181.3 Da    PI: 7.9366
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0093461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39131121100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             aCa+Ck++r+kC ++C lapyfpa++ ++f+n+hklFG+sn+lk+++++++++r++a++s+++e++a+ +dPv+G++gvi++l+ q+
  RcHm_v2.0_Chr2g0093461  13 ACASCKHQRKKCDSNCELAPYFPANKYHEFQNAHKLFGVSNILKIIASIEPHKRKAAAESILFEGNAWKSDPVHGCLGVIKDLTAQM 99 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             + ++++l++++++
  RcHm_v2.0_Chr2g0093461 100 SFHEKQLSVVNQH 112
                             ********99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MDRESSPSPL NQACASCKHQ RKKCDSNCEL APYFPANKYH EFQNAHKLFG VSNILKIIAS  60
IEPHKRKAAA ESILFEGNAW KSDPVHGCLG VIKDLTAQMS FHEKQLSVVN QHLAFHKEQQ  120
KKRQEQDQSD FLNDELPDLV RP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-35LBD family protein