PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0093651

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 926aa MW: 101699 Da PI: 5.44

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0093651	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.7e-07	607	627	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f +G C +GdrC F+H RcHm_v2.0_Chr2g0093651 607 PCDNFVNNGSCIRGDRCLFSH 627 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence
MEEPQIEKEK PSETLISLPP HRRRSLKSET HRTLLRILSH CYDVLQHSDQ NVPPELNQDN 60 GSNELGEATA KEGGGNVELV EPDSRKCDDS AAQPELVAVE RCDGKGLRER IEQIEDFFSE 120 EGNEELSGQM DFEDTFGINF GDLEFGPEEM LMDELEQIVK GNDDNAPKLS TGSLVENEGA 180 NDKFELLSNQ EQRDDSQHNA TVRPENADQV VIGEIHNEGE CNECTHSLLK TSALDVEPII 240 QQKAMETSVS SGSAEESLIP ITEVAQFEVP EHFSQKVPEA FVFPLDTDMV GDASKPSQSK 300 SWSHKADDLE GEHEIQPNEN KMEMVCTGNA VNCPNHMNDG DMEEGEISDD DGMDDRSTNM 360 LLHDTARCEE NKVNEFQIVK DVNGQKEHSG KEAIGREFDS NSFLMSIADN VQNPRGVELR 420 ESKTKLIGRP GVVQGKTMEA IKENGYDPSL ESRRIEEKDS GIGRGIGFQE ACTNNQASHE 480 KISQNYEAGS CGTTSEDKVD AGAANKRKRG PPSKEKKQRK KAKERLKRAE MNRKLGVKRL 540 KLHSIEKPKT VVYCRHYIAG RCHEGDKCKF SHDTVPLTKS KPCCYFSRQS CMKGDDCPFD 600 HQLSKYPCDN FVNNGSCIRG DRCLFSHKIL SKEEGATAAS KPELVSPTVR VPHSTGTHSH 660 NNTELIMART LLEQPAMATK GFSFLSTEKS SLVHSSMSKQ GVLAPDGSTG AKAGNPMQQS 720 PSSSVPNTKE NIMTTPPVVT PKGINFLSFG KASPDGSSGK NQDHHHSNRS VSETVQNFNG 780 VPKVIQPAQP KAADFLSVGK APVANSSSGN PFSLTSSSDN GNSRHFGEGK SAFDKPQNSS 840 AISSRLQPSP LTSGQSSYYT ASRFKDPVTQ RSLFSTLAFA EKYESKKTNH SIGSTFTPVD 900 RETKQNDSGK AFNILDFLST IGSTTK

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence

MEEPQIEKEK PSETLISLPP HRRRSLKSET HRTLLRILSH CYDVLQHSDQ NVPPELNQDN  60
GSNELGEATA KEGGGNVELV EPDSRKCDDS AAQPELVAVE RCDGKGLRER IEQIEDFFSE  120
EGNEELSGQM DFEDTFGINF GDLEFGPEEM LMDELEQIVK GNDDNAPKLS TGSLVENEGA  180
NDKFELLSNQ EQRDDSQHNA TVRPENADQV VIGEIHNEGE CNECTHSLLK TSALDVEPII  240
QQKAMETSVS SGSAEESLIP ITEVAQFEVP EHFSQKVPEA FVFPLDTDMV GDASKPSQSK  300
SWSHKADDLE GEHEIQPNEN KMEMVCTGNA VNCPNHMNDG DMEEGEISDD DGMDDRSTNM  360
LLHDTARCEE NKVNEFQIVK DVNGQKEHSG KEAIGREFDS NSFLMSIADN VQNPRGVELR  420
ESKTKLIGRP GVVQGKTMEA IKENGYDPSL ESRRIEEKDS GIGRGIGFQE ACTNNQASHE  480
KISQNYEAGS CGTTSEDKVD AGAANKRKRG PPSKEKKQRK KAKERLKRAE MNRKLGVKRL  540
KLHSIEKPKT VVYCRHYIAG RCHEGDKCKF SHDTVPLTKS KPCCYFSRQS CMKGDDCPFD  600
HQLSKYPCDN FVNNGSCIRG DRCLFSHKIL SKEEGATAAS KPELVSPTVR VPHSTGTHSH  660
NNTELIMART LLEQPAMATK GFSFLSTEKS SLVHSSMSKQ GVLAPDGSTG AKAGNPMQQS  720
PSSSVPNTKE NIMTTPPVVT PKGINFLSFG KASPDGSSGK NQDHHHSNRS VSETVQNFNG  780
VPKVIQPAQP KAADFLSVGK APVANSSSGN PFSLTSSSDN GNSRHFGEGK SAFDKPQNSS  840
AISSRLQPSP LTSGQSSYYT ASRFKDPVTQ RSLFSTLAFA EKYESKKTNH SIGSTFTPVD  900
RETKQNDSGK AFNILDFLST IGSTTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	516	527	KKQRKKAKERLK
2	519	541	RKKAKERLKRAEMNRKLGVKRLK