PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0093671

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 467aa MW: 52332.7 Da PI: 4.9558

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0093671	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.4	1.3e-34	140	231	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k++++++d+e++ ++swse +sf+v+d +ef+k++Lp yFkhsnf+SF+RQLn+YgFkkv+ ++ weF ++ F+ RcHm_v2.0_Chr2g0093671 140 FLNKTFQMVDDPETDLIVSWSEARQSFIVWDCHEFSKTLLPMYFKHSNFSSFIRQLNTYGFKKVDPDR---------WEFVNEGFQG 217 9**************************************************************999.........****** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 gkk+ll++ikr+++ RcHm_v2.0_Chr2g0093671 218 GKKHLLKSIKRRSR 231 *********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MVVSYGGYGG GGSCSPFSST AQITQPKEAS EEAVKVKEEE EAVNFKGGSF DGSSASTSSS 60 TASPKLTEEV EEPNKAVELA KPEVVQIKAE SIEFVVDDYD GRDCFNCVSG SNINGSYSSS 120 SSKVLPKPME CLLETGPPPF LNKTFQMVDD PETDLIVSWS EARQSFIVWD CHEFSKTLLP 180 MYFKHSNFSS FIRQLNTYGF KKVDPDRWEF VNEGFQGGKK HLLKSIKRRS RYNKQPQGSN 240 ISANSTKKAG LEVQLETLKK DQDVLKLEIL NLKQQQKYSQ HQLTAVEERI RNSECKQQRM 300 LLFLTKTTRK PNFVEQLMQK RALKRELEGG DLGKRRRLLS AQGFEDFGDC GDQVQVLAGQ 360 LPEVVVPQQQ ETPLPASVVD KSCSSLQNNK PQAEVHFVYH DMSDKLLQEN SVFDDEYAVN 420 DSNFYQELED LITGPHDFDD LVVKPRDWSG YVSNCLVEQA GCVGSMP

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MVVSYGGYGG GGSCSPFSST AQITQPKEAS EEAVKVKEEE EAVNFKGGSF DGSSASTSSS  60
TASPKLTEEV EEPNKAVELA KPEVVQIKAE SIEFVVDDYD GRDCFNCVSG SNINGSYSSS  120
SSKVLPKPME CLLETGPPPF LNKTFQMVDD PETDLIVSWS EARQSFIVWD CHEFSKTLLP  180
MYFKHSNFSS FIRQLNTYGF KKVDPDRWEF VNEGFQGGKK HLLKSIKRRS RYNKQPQGSN  240
ISANSTKKAG LEVQLETLKK DQDVLKLEIL NLKQQQKYSQ HQLTAVEERI RNSECKQQRM  300
LLFLTKTTRK PNFVEQLMQK RALKRELEGG DLGKRRRLLS AQGFEDFGDC GDQVQVLAGQ  360
LPEVVVPQQQ ETPLPASVVD KSCSSLQNNK PQAEVHFVYH DMSDKLLQEN SVFDDEYAVN  420
DSNFYQELED LITGPHDFDD LVVKPRDWSG YVSNCLVEQA GCVGSMP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	LKSIKRR
2	334	338	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	4e-84	HSF family protein