PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0094231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 341aa    MW: 37486.2 Da    PI: 9.1159
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0094231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32182238158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hAl+R RgsgGrF
  RcHm_v2.0_Chr2g0094231 182 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHQHALNRVRGSGGRF 238
                             57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MPCQIPKDTL LELAIPTHNL EKRIFYQSSF QSMPLNANCM SWNPSERQVS PPLSKDVSFK  60
VELPPQLHHD AKHLGLRVQP DPGSCTTHSI GQSQGQCLSS ESGEDETRGK GVEGTMKPAF  120
LSNLDLMPHP PQVGYSNIVG QFHPYAEPYY GGFLTAYGPQ AMPPMVGMAP PRVPLPLDLQ  180
EDGPIYVNAK QYHGILRRRQ SRAKLEAQNK LLKARKPYLH ESRHQHALNR VRGSGGRFLS  240
KKELQQYDQN PTSGSNDHVS GSINLHQKDT PERESHHSGS SDLVTSVASH SGITSVSGTN  300
AIFRQPDRRF SGGVPPHMSG AMQFSGGLMG SGNQHCASFV R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-49NF-YA family protein