PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0094411
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 228aa    MW: 26164.2 Da    PI: 7.481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0094411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+ eEde lv++++ +G+g W+ I+++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr2g0094411 14 KGAWSVEEDEVLVHYIETHGTGKWRDIPQRAGLNRCGKSCRLRWLNYL 61
                            79********************************************97 PP
2Myb_DNA-binding48.81.6e-1567111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ ++++del+ +++++lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr2g0094411  67 RGNISADDDELIFRLHNLLGNR-WTLIAGRLP-GRTDNEIKNHWNTN 111
                             7899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGRKPCCNKQ GVKKGAWSVE EDEVLVHYIE THGTGKWRDI PQRAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI SADDDELIFR LHNLLGNRWT LIAGRLPGRT DNEIKNHWNT NLSKRSLEQA  120
PHNDIEAHDH DHHHQHDEYP SKKLKEAEDI IYTEDQNKAI RTKAFELMKD LIIPSTIALD  180
DNSTIDNSHH HEIEKAISSS SSVVADLHHQ ELSNSCGGGG WRRRIQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-59MYB family protein