PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0094491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 296aa    MW: 33398.4 Da    PI: 6.8445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0094491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-141461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+ Ed  l +++k +G g+W+  +++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr2g0094491 14 RGAWTALEDRDLTEYIKVHGEGRWRNLPQKAGLKRCGKSCRLRWLNYL 61
                            89********************************************97 PP
2Myb_DNA-binding54.82.2e-1767111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ +++E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr2g0094491  67 RGNISPDEEELIVKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                             7899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGRSPCCAKE GLNRGAWTAL EDRDLTEYIK VHGEGRWRNL PQKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIVK LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRIQDQE  120
ARSSPSSAGG EEPKSKKAKN VMASPFSHNV IRTKAAKCNK VFINPQLPHK GLFQMDDHRP  180
MDHHQHVDHR PDENGLSSSP SLLETSSSSE FLVDFGMNSD LCLASLLSSK FSSGDHLFSE  240
EMQLQEQYWS GNVGSGEDCV VDDQLQLNTV LNFQSLNYFL DADANQGDWL ELAESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-62MYB family protein