PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0095581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 210aa    MW: 23318.6 Da    PI: 4.6077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0095581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-191665255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  RcHm_v2.0_Chr2g0095581 16 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 65
                            8*****999.**********933...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MVKQTIGKPS ERSDAKYKGV RKRKWGKWVS EIRLPNSRER IWLGSYDTPE KAARAFDAAL  60
FCLRGRTAKF NFPDNPPDIS GGRSLSPAEI QAEAARFANN EENPPPPQVP RSHSDLSMSE  120
QQTESPSVSE GSGTLVMDSA ASDFSVTLNQ NDESFSDLFR TFGSGNYATE YGLFPGFDDL  180
NGQFFSPAPQ TPAVDYAEEN LAQESFLWNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-58ERF family protein