PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0096871
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 189aa    MW: 21419 Da    PI: 5.7054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0096871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-14121164447
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WT+eE++l++++ k +G+g+Wk+I+r+    R + q+ s+ qky
  RcHm_v2.0_Chr2g0096871 121 WTEEEHKLFLQGLKIYGKGDWKSISRHCVMSRNPTQVASHAQKY 164
                             *****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MEPFSFFPTA PSPPFPSSSS SALLESTAQL AEDGDQWTFE ENKRFETALA EFDLGAPDLF  60
DNIQTRVPGK TLWEIKKHLD DLFEDIEKIE TGIIPIPNYK TTPTQVKSNP RSQPRKKGVI  120
WTEEEHKLFL QGLKIYGKGD WKSISRHCVM SRNPTQVASH AQKYFLRLQN SAESEQNANG  180
ECSTSNNKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-45MYB_related family protein