PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0099671

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 362aa MW: 41413 Da PI: 4.8572

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0099671	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.6	7.9e-56	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL+ ++e++ewyfFs++dkky+tg+r+nrat +g+Wk RcHm_v2.0_Chr2g0099671 8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQDrcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWK 93 69**************************.9***********953432234667************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mheyrle RcHm_v2.0_Chr2g0099671 94 ATGRDKSVYD-KSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 137 ******.999***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MESIESTVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLQDRCRIG 60 YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKS VYDKSKLIGM RKTLVFYKGR 120 APNGQKTDWI MHEYRLESDE NGPPQEEGWV VCRAFKKRTS SQNKSMEGWD SSYFYDELHG 180 VSSIVDPADF ISRHPQREAQ SFLAAQSFLC KQEITAEADN LNSTFMPSDH FVQLPQLESP 240 SLPLIKRPNS SMSLISSSEN NVEDDVELIN NRGCSSNIIN ANKAAAVTDW RDLDKFVASQ 300 LSQEDKYNEL GDHGEYSSFG VHDHDDSDMA ALLLLQRDDG NKLNGFLSSS SDCDLGICIF 360 EK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MESIESTVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLQDRCRIG  60
YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKS VYDKSKLIGM RKTLVFYKGR  120
APNGQKTDWI MHEYRLESDE NGPPQEEGWV VCRAFKKRTS SQNKSMEGWD SSYFYDELHG  180
VSSIVDPADF ISRHPQREAQ SFLAAQSFLC KQEITAEADN LNSTFMPSDH FVQLPQLESP  240
SLPLIKRPNS SMSLISSSEN NVEDDVELIN NRGCSSNIIN ANKAAAVTDW RDLDKFVASQ  300
LSQEDKYNEL GDHGEYSSFG VHDHDDSDMA ALLLLQRDDG NKLNGFLSSS SDCDLGICIF  360
EK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	1e-145	NAC family protein