PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0099931

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 939aa MW: 100618 Da PI: 4.796

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0099931	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.8e-07	917	939	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+ ++++G+Ck G++C++ H+ RcHm_v2.0_Chr2g0099931 917 QRVCK-YHESGYCKKGASCSYLHP 939 789.***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence
MDPSYVSEDN TGELDKKQGP YHSFHGKVKT RRSVFGRKGR ESFSPRREGG ISNNSGSKAQ 60 NNQVREALGI NGLNTTANQA NHSGLVRCGR NNESAVESNI SSEVASENSS MSFSAVMKAN 120 LPVESFEMEK IWHYQDPAGK VQGPFAMVQL CKWGTTGFFP PDHRIWRINE NQDDSILFTD 180 ALKGQYCKKP LLPQDSNIQS EGLKVALDGR NNVLDGGWNK SMNATPIDGR KVEESWNTKQ 240 HGQSLQNGGN TEVVRSNTPA DAVNSNEKQT GIHNSGNTEV VRSSTPADAV NSNEKQTGIH 300 NNGNTEVLRS STPADAVNSN EKQTGIHLQG CESVKVDISL TNQPQECSSL TSPVLSVKPY 360 ETLSHQEGEG TTENDSHQKN GTVDWQQTTR DQMNNEQEQD EKGRDFPSLA PKPSNGDLRG 420 QASENNQSLS SNLPVQDGGH SWSGSNLVGG GEQLHKVTGD WGGYSPTPAK PSVEEWDSSL 480 VSASSLKPSE MPSDYVAAPV SVSGQLTEPI PSHPTSIASS WQEILTETNE FCTLAADESV 540 SDLLAEVEAM ESLCGLATPT STMNCGGEFT EGSKNDSISS EEGFSPAPEP GKGDALSSTC 600 DLQLSEAMVT DEPLGARQAS ILDLQQRSGV HSSTSPELHG DRKPSDVSVN ELEANASVDR 660 LEANVSVDQL EANVSVDQME AGEIPTTAPS KECWDMSSTD NPWKARLESR KTSLEAVQGN 720 INANWGGSDP GGTNVLDLQQ NSGVHSSTST EVRRKPSNVS VNQLEANVSV NQLEPGEIQI 780 TAPSKESWDM STADNPWKPR LESRETSCEA VQGNVNAGWG GDRGSTNMGW RGPDPGSANV 840 GWRGGQGTIQ GNTGASAGGM WEGQSRYGGD KSSGPRGRGF PSRDNIGFGK GRFVGNRQAL 900 YGNGNGGGSF RPPPRGQRVC KYHESGYCKK GASCSYLHP

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence

MDPSYVSEDN TGELDKKQGP YHSFHGKVKT RRSVFGRKGR ESFSPRREGG ISNNSGSKAQ  60
NNQVREALGI NGLNTTANQA NHSGLVRCGR NNESAVESNI SSEVASENSS MSFSAVMKAN  120
LPVESFEMEK IWHYQDPAGK VQGPFAMVQL CKWGTTGFFP PDHRIWRINE NQDDSILFTD  180
ALKGQYCKKP LLPQDSNIQS EGLKVALDGR NNVLDGGWNK SMNATPIDGR KVEESWNTKQ  240
HGQSLQNGGN TEVVRSNTPA DAVNSNEKQT GIHNSGNTEV VRSSTPADAV NSNEKQTGIH  300
NNGNTEVLRS STPADAVNSN EKQTGIHLQG CESVKVDISL TNQPQECSSL TSPVLSVKPY  360
ETLSHQEGEG TTENDSHQKN GTVDWQQTTR DQMNNEQEQD EKGRDFPSLA PKPSNGDLRG  420
QASENNQSLS SNLPVQDGGH SWSGSNLVGG GEQLHKVTGD WGGYSPTPAK PSVEEWDSSL  480
VSASSLKPSE MPSDYVAAPV SVSGQLTEPI PSHPTSIASS WQEILTETNE FCTLAADESV  540
SDLLAEVEAM ESLCGLATPT STMNCGGEFT EGSKNDSISS EEGFSPAPEP GKGDALSSTC  600
DLQLSEAMVT DEPLGARQAS ILDLQQRSGV HSSTSPELHG DRKPSDVSVN ELEANASVDR  660
LEANVSVDQL EANVSVDQME AGEIPTTAPS KECWDMSSTD NPWKARLESR KTSLEAVQGN  720
INANWGGSDP GGTNVLDLQQ NSGVHSSTST EVRRKPSNVS VNQLEANVSV NQLEPGEIQI  780
TAPSKESWDM STADNPWKPR LESRETSCEA VQGNVNAGWG GDRGSTNMGW RGPDPGSANV  840
GWRGGQGTIQ GNTGASAGGM WEGQSRYGGD KSSGPRGRGF PSRDNIGFGK GRFVGNRQAL  900
YGNGNGGGSF RPPPRGQRVC KYHESGYCKK GASCSYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	6e-22	C3H family protein