PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0100001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 389aa    MW: 42380 Da    PI: 5.8752
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0100001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.1e-19301335135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  RcHm_v2.0_Chr2g0100001 301 CSHCGVQKTPQWRTGPNGAKTLCNACGVRYKSGRL 335
                             *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MLYQTHHPSF LFQFHPHSST YSSPSSVTST TTSLSPPPPL PPCPPQVERS EMECVEAALK  60
TSIRTEMAVK EAISDDLWGL NAQNGGVQNF EDFSVDDLLD FSNDDGFVEQ QAEEEEEEDD  120
KGSVLPKKES MEEKENSTPS SCLSEKNELG SEPTEPTSEL SVPADDLENL EWLSHFVEDS  180
FSGFNTSLPA GFLAVKPKNP TEKRPEPEAL KPCFKTPVPA KARSKRTRTG GRVWSLGSPT  240
FTESSSSSSS SSSTSSCPSS PWLIYNTTQG PGAFGSSVEK PQKKPKRPAT EGGSSQPPRR  300
CSHCGVQKTP QWRTGPNGAK TLCNACGVRY KSGRLVPEYR PACSPTFSSE LHSNHHRKVM  360
EIRRKKEVSP GPEPGPMTTA AAAPVVRSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285291PKRPATE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-71GATA family protein