PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0100071
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29831.3 Da    PI: 8.8317
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0100071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-27959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+ sst+k++ey+s
  RcHm_v2.0_Chr2g0100071  9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAQVSLIMQSSTDKIHEYIS 59
                            569**********************************************86 PP
2K-box84.42.4e-2871166196
                   K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                             yqk+ + +l+++++e ++++l kLk+ +++L+r +R++lG dL+ Ls+ eLq Le+ +++s++ iR++K+++l++q e+++kk k+l
  RcHm_v2.0_Chr2g0100071  71 YQKNLQIDLWNSHYEAMKENLWKLKEVNNKLRRDIRQRLGHDLNGLSYAELQDLEETMNQSVQIIRDRKYHVLKTQAETTRKKVKNL 157
                             78888899******************************************************************************* PP

                   K-box  88 qeenkaLrk 96 
                             +e+n +L +
  RcHm_v2.0_Chr2g0100071 158 EERNSNLMH 166
                             ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AQVSLIMQSS TDKIHEYISP  60
TTTTKKMFDL YQKNLQIDLW NSHYEAMKEN LWKLKEVNNK LRRDIRQRLG HDLNGLSYAE  120
LQDLEETMNQ SVQIIRDRKY HVLKTQAETT RKKVKNLEER NSNLMHGYGA PGNEDPQYGY  180
VDNEGDYESA VALANGASNL YFFNRVHNNH NLDHGHGGGS LVSSITHLQN PNNHGNHNLE  240
NGHGGGSLIS SITHLHDLRL A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-69MIKC_MADS family protein