PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0101281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 81aa    MW: 9285.29 Da    PI: 9.4693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0101281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101457344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            +WT+   +++ +a +++ ++   +W ++ar +g g++++++k ++
  RcHm_v2.0_Chr2g0101281 14 SWTPKQNKQFEKALALYDKDtpdRWQKVARAVG-GKSAEEVKRHY 57
                            7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    
MASNSLSSRS SSSSWTPKQN KQFEKALALY DKDTPDRWQK VARAVGGKSA EEVKRHYEIL  60
IEDVKHIESG RIPYPDYRNS D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-33MYB_related family protein