PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0101421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 252aa    MW: 27617.3 Da    PI: 8.1293
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0101421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20134168135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  RcHm_v2.0_Chr2g0101421 134 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 168
                             ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MQRCSSTSSQ GHVMGSCSCG LFHTQSNSSF SMLFSMPNNH HKAYDQYEPS DHHHMYSFAS  60
PSSVDCTLSL GTPSTRLTAE DGNDDKRGGR HERRSVSNFC WDLLQPKHAT SEPKNSSGNR  120
GGAGSNDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRA TAAAATSANG  180
ATSSGSHSWI NNSQTQKMQC YAPSMNGNEF RFMDDHDMMT SHEPADAGGG IPFLSWRLNV  240
TDRPSLVHDF TR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-56GATA family protein