PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0102221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24750.9 Da    PI: 6.3789
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0102221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1958112357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                             k++++t+eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  RcHm_v2.0_Chr2g0102221  58 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112
                             45699************************************************95 PP
2HD-ZIP_I/II118.82.9e-3858149293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ +++++ e+++Le+e+e+L+
  RcHm_v2.0_Chr2g0102221  58 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKDHENVVLEKCKLESEMEKLK 144
                             9************************************************************************************** PP

             HD-ZIP_I/II  89 eelke 93 
                             e+l+e
  RcHm_v2.0_Chr2g0102221 145 EQLSE 149
                             **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTTTTPINHQ VDQDHMLLIS QLYPDVYTQI VPPQGAATKP RRRRKKSKSG EAGGAGAKKR  60
KLTEEQVTLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS  120
ILKKDHENVV LEKCKLESEM EKLKEQLSEA EKEIHRLSER AEGGGSSNSP SSSLSMEANI  180
DPPFFGEFGV EEYDGVFYMP QNNYINGMEW MNQYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14160RRRRKKSKSGEAGGAGAKKR
24161RRRRKKSKSGEAGGAGAKKRK
34261RRRRKKSKSGEAGGAGAKKR
44262RRRRKKSKSGEAGGAGAKKRK
54363RRRRKKSKSGEAGGAGAKKRK
64464RRRRKKSKSGEAGGAGAKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-71HD-ZIP family protein