PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103411
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 362aa    MW: 41915.6 Da    PI: 4.8824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.54.9e-181099199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                            ffk+  p d ++++ l +p++f++++ g+   + + +l++   r+W v +  +   ++++++kGW+eFv++ngLk g+ +vF++ g+s+
  RcHm_v2.0_Chr2g0103411 10 FFKIV-PGDQFTNK-LKIPREFLQHFHGN--IPHQCRLQT-AARTWAVDV--EEVNNKFYFQKGWNEFVQDNGLKYGELLVFHYAGNSD 91
                            56655.77777776.********777555..333478666.89*******..999999******************************* PP

                            E..EEEEE-S CS
                      B3 90 felvvkvfrk 99
                            f  +v +f k
  RcHm_v2.0_Chr2g0103411 92 F--HVDIFGK 99
                            *..***9987 PP
2B3438.2e-14205301598
                             -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              +++++ k + ++lp +f+      +++ + +tl++ d + ++W+ kl+  + + +r  l + W++F ++n+LkegD + F+l++++
  RcHm_v2.0_Chr2g0103411 205 SMKPSYIKYKFVWLPSEFTMLVkpLIENSGYVTLRVSDGRVKTWQAKLTCnDVTTNRSKLHGSWSKFMRDNNLKEGDLCAFMLIKDT 291
                             456666667779******95558533333556777777777*******77788889999*************************986 PP

                             EE..EEEEE- CS
                      B3  89 efelvvkvfr 98 
                             +    v +fr
  RcHm_v2.0_Chr2g0103411 292 TILIEVVIFR 301
                             6666777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MAPRRKLPSF FKIVPGDQFT NKLKIPREFL QHFHGNIPHQ CRLQTAARTW AVDVEEVNNK  60
FYFQKGWNEF VQDNGLKYGE LLVFHYAGNS DFHVDIFGKN TCGKLFVMPE IEEANEEDDD  120
VSLQISDDSP ESSPPPQKKY KTSSSDKGQM KNKEAHWSKS KMKKKDKGGT SSTQRFTRQK  180
LEPRWRAHVR AEAFKFKNPS AFLVSMKPSY IKYKFVWLPS EFTMLVKPLI ENSGYVTLRV  240
SDGRVKTWQA KLTCNDVTTN RSKLHGSWSK FMRDNNLKEG DLCAFMLIKD TTILIEVVIF  300
RTKEAATCTF SPDMSDNEDH EKDDEDDDDE EGDEENEDEE EEEEEDDDDS RETVDYVSSD  360
SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.14e-18B3 family protein