PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103431
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 142aa    MW: 16262.7 Da    PI: 10.6593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.4e-1851136594
                             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              ++s++ + + l+lp kfa+++  k  +++  +l+  s r+W+v+l  r +  r+++++GW eFv++n+Lkeg  ++F+l+++ +  
  RcHm_v2.0_Chr2g0103431  51 SLHSSYITGHYLYLPAKFANRYLVK--QPRHAILRVASKRTWSVNL--RYTAARTTFQTGWFEFVQDNDLKEGGACIFMLTDNIQVV 133
                             45789999999***********544..55679**************..77888899***********************98874443 PP

                             .EE CS
                      B3  92 lvv 94 
                             + v
  RcHm_v2.0_Chr2g0103431 134 FDV 136
                             455 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MRPSSRTQKF TEGGPEVPRK MPGPVMASYG KYIALQRANG FKSANPDFRI SLHSSYITGH  60
YLYLPAKFAN RYLVKQPRHA ILRVASKRTW SVNLRYTAAR TTFQTGWFEF VQDNDLKEGG  120
ACIFMLTDNI QVVFDVVFFR AT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-18B3 family protein