PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 461aa    MW: 52107.8 Da    PI: 8.5189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17211171100
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                             f+k  + s++ ++ +l +p ++++++  ++ ke sk + l+ + g +Wev++  +++ g+++++kGW++F+k   L+++D++ F+++
  RcHm_v2.0_Chr2g0103461  21 FIKFISESSSKET-NLKVPTSYVKKYqeKYGKELSKVVHLKLPCGTEWEVEV--TGHNGHFWFEKGWEDFCKFYSLQSRDSLAFQYE 104
                             5565555555555.5***********9977789*******************..********************************9 PP

                             SSSEE..EEEEE-SS CS
                      B3  86 grsefelvvkvfrks 100
                              +s+f  +v +f+ks
  RcHm_v2.0_Chr2g0103461 105 ANSRF--KVNIFDKS 117
                             99999..9*999985 PP
2B344.43e-14221316899
                             -HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   8 sdvlksgrlvlpkkfaeeh....ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             +++ k  +l+l+ +   ++    g ++ ++  ++l+ ++g     W+v+++y+  + ++ l++GW++Fv+ n+L++gD++ F+l+++
  RcHm_v2.0_Chr2g0103461 221 ASYIKGTMLWLSTEISMNMltylG-QNSGN--VSLRVSEGstrGLWTVEMKYDTERATFRLQSGWNKFVQGNNLNAGDVCGFMLIDE 304
                             555555556666555433366543.33344..4555544444589****************************************99 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              +  + v +fr+
  RcHm_v2.0_Chr2g0103461 305 IGLLFEVNIFRR 316
                             777789999987 PP
3B346.75.7e-15363448996
                             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             ++ ++ +l+l  +f ++h ++k+++    l  + g  +W v l+y+ +++r  +++GW +Fv++n+L+ gD +vF l++++ f++ v
  RcHm_v2.0_Chr2g0103461 363 SSISH-CLWLCSRFSQKHLSDKPSN--AELHVPGGtTTWCVGLKYEVGRKRAKFQSGWTKFVRDNNLNIGDECVFVLTDENIFSFEV 446
                             33444.5***********7776665..7777777779***************************************99878777766 PP

                             EE CS
                      B3  95 kv 96 
                              +
  RcHm_v2.0_Chr2g0103461 447 VI 448
                             65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    
MTSLCRKNDS RPKFSATKFS FIKFISESSS KETNLKVPTS YVKKYQEKYG KELSKVVHLK  60
LPCGTEWEVE VTGHNGHFWF EKGWEDFCKF YSLQSRDSLA FQYEANSRFK VNIFDKSKTE  120
IDYPIKSPDM QENGVNDHSP PASPPLPQKK KEATSSGGKK DLSAEKDEGG KSSTTQRSQK  180
PTTEVPMRMH SSAIGGKATA LQRAKEFKSR NPSCFLVIMH ASYIKGTMLW LSTEISMNML  240
TYLGQNSGNV SLRVSEGSTR GLWTVEMKYD TERATFRLQS GWNKFVQGNN LNAGDVCGFM  300
LIDEIGLLFE VNIFRRTEVA TSSPGYDEYD VDDKDDHGLH DANDDYAADE NRHRSFRTVL  360
LKSSISHCLW LCSRFSQKHL SDKPSNAELH VPGGTTTWCV GLKYEVGRKR AKFQSGWTKF  420
VRDNNLNIGD ECVFVLTDEN IFSFEVVIVA AKSTLPPGKF C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-25B3 family protein