PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 119aa    MW: 13423.3 Da    PI: 10.2584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-1830118699
                             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                             +++ +   g+l lp  fa++h    e++  ++l+d++g+ W+v++ ++++     +++GW +Fv+ n+ +egD + F+l+++s+f +
  RcHm_v2.0_Chr2g0103471  30 MHPTYVCGGILNLPCGFAKKHLT--ERPNHVSLQDSNGKIWSVNIHFSNQA---SFRSGWTDFVRGNNFEEGDACAFELIKKSKFLF 111
                             4566666788***********63..46778***************665554...69************************99***99 PP

                             EEEEE-S CS
                      B3  93 vvkvfrk 99 
                              v++fr+
  RcHm_v2.0_Chr2g0103471 112 DVHFFRT 118
                             9999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    
MSPIGNKKKD NALQRANAFK SVKPSFVVAM HPTYVCGGIL NLPCGFAKKH LTERPNHVSL  60
QDSNGKIWSV NIHFSNQASF RSGWTDFVRG NNFEEGDACA FELIKKSKFL FDVHFFRTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-19B3 family protein