PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0103491

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 143aa MW: 16289.9 Da PI: 7.5622

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0103491	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.1	8.6e-15	48	141	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkv++ s++++++ + +p +fa ++ + k++ +++ + + r W v li k s +++GW Fv++ L++gD+++F+l++ RcHm_v2.0_Chr2g0103491 48 FFKVTLGSSHMEKSVVHVPASFAWSFIKRKKQ--KVM-LQVTDRLWPVDLIAFKPS-LASFSTGWATFVEEYSLRVGDVCIFELMEM 130 899999*****************9555444..444.44477***754443.456899******************9975 PP .SEE..EEEEE CS B3 88 .sefelvvkvf 97 ++ l v++f RcHm_v2.0_Chr2g0103491 131 nDDIILQVHFF 141 46666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MCLGDFVIGK NKISKTSVQV TERPFSSLTA PLDNHHEAAN NFVSENPFFK VTLGSSHMEK 60 SVVHVPASFA WSFIKRKKQK VMLQVTDRLW PVDLIAFKPS LASFSTGWAT FVEEYSLRVG 120 DVCIFELMEM NDDIILQVHF FRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	2e-17	B3 family protein