PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 212aa    MW: 24737.1 Da    PI: 5.8377
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.7e-1828112898
                             -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              d+++   l +pkkf++e+g+    s  + l+ +sg +Wev++  +++ g+++++k+W eF k   L  gDf+vF+++g+sef  +v
  RcHm_v2.0_Chr2g0103501  28 DDTSRDVKLGIPKKFVNEYGQC--LSNSVCLKLPSGSEWEVEV--TRSNGKVWFEKCWPEFSKFYSLSIGDFLVFEYEGDSEF--HV 108
                             4566667899*********855..7889***************..**********************************9999..88 PP

                             EEE- CS
                      B3  95 kvfr 98 
                              +f+
  RcHm_v2.0_Chr2g0103501 109 FIFD 112
                             7776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MSSFSRENDC RRPICCSPTP RFIQVILDDT SRDVKLGIPK KFVNEYGQCL SNSVCLKLPS  60
GSEWEVEVTR SNGKVWFEKC WPEFSKFYSL SIGDFLVFEY EGDSEFHVFI FDISTTEIDY  120
PIKRPKMEEA PEDEFSVEIL EDIPPSPKTR EKTPLPCRQS YKKMKTSLTG KTDQMFENEN  180
TEPFENPKKN KDSHCSASKI KSMEHKFKKY FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-26B3 family protein