PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 292aa    MW: 33692.6 Da    PI: 9.2882
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.7e-1815105199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ffkv    d ++s  l +p kf++++g     sk ++l+ +sg +Wev++  + ++++ +++kGW+eF k   L++g f++F+++g+
  RcHm_v2.0_Chr2g0103551  15 FFKVI--VDETSSIKLKIPPKFVKKYGDY--LSKSVRLKLPSGCQWEVEV--TESDSEAWFEKGWQEFFKFYSLDSGHFLLFTYQGN 95 
                             78888..89999999***********866..8889***************..**********************************9 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                             s f   v +f++
  RcHm_v2.0_Chr2g0103551  96 SMF--EVCIFDR 105
                             999..9999987 PP
2B335.81.5e-11202291698
                             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                             +++++  +  l +p +f+ ++ +  ++   l+l+    r W+  l+ +   ++  +  GW  Fvk+n+L +gD+++F+l++ ++  l
  RcHm_v2.0_Chr2g0103551 202 MQPHYIHNYTLNIPLRFIMSFTKHGRQ--FLKLQ-VGDRFWSACLNLSEIHRTAKINHGWHVFVKENHLSVGDVCIFELMKVNDLVL 285
                             577788888899*****9888544233..34443.36699999998888889999*************************9999999 PP

                             EEEEE- CS
                      B3  93 vvkvfr 98 
                             +v++fr
  RcHm_v2.0_Chr2g0103551 286 KVHMFR 291
                             999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MSAFRSTFSA TTPRFFKVIV DETSSIKLKI PPKFVKKYGD YLSKSVRLKL PSGCQWEVEV  60
TESDSEAWFE KGWQEFFKFY SLDSGHFLLF TYQGNSMFEV CIFDRTATET EYPIIIDDSY  120
VEDDNSIEIL NDFTPCSKTR DKSPSPSARP SRRKRTLGPT SEAKMKGKED DFSRKKDGGG  180
SSKALERAKA FKSENPSIMI AMQPHYIHNY TLNIPLRFIM SFTKHGRQFL KLQVGDRFWS  240
ACLNLSEIHR TAKINHGWHV FVKENHLSVG DVCIFELMKV NDLVLKVHMF RG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164176KMKGKEDDFSRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-25B3 family protein