PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103561
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 189aa    MW: 21768.9 Da    PI: 7.8913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32e-1622110699
                             ..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   6 tpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                             +p+  +k++ +  +pkkf++++g+    s  + l+ +sg +Wev +  ++++++++++kGW  F k   L+ g f++F ++g+s+f 
  RcHm_v2.0_Chr2g0103561  22 IPNQKSKHCKFwKIPKKFVKRYGEH--LSNSVCLKIPSGCEWEVGV--TRSGNKVWFEKGWPAFSKFYSLDYGAFLLFGYEGNSKF- 103
                             5667777777768*********955..8889***************..**********************************9999. PP

                             .EEEEE-S CS
                      B3  92 lvvkvfrk 99 
                               v +f++
  RcHm_v2.0_Chr2g0103561 104 -QVCIFDT 110
                             .9999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MCCIKWNNMI AVGGLDVLEN TIPNQKSKHC KFWKIPKKFV KRYGEHLSNS VCLKIPSGCE  60
WEVGVTRSGN KVWFEKGWPA FSKFYSLDYG AFLLFGYEGN SKFQVCIFDT SATEIAYPVH  120
IEESDNINCE DDNSVEVPDD FPHSCPKTRE KSPLPSPRPH KRRRISSNSK ENFQGMECIF  180
DSLFMCKYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-27B3 family protein