PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 190aa    MW: 20777.6 Da    PI: 4.1602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-1127113899
                             -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                      B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                             + +l+ g l +p++ ++++g      + + ++ ++g  W ++l  +k+ ++++l+kGW +F+k   L+ g  ++F+ +g+   f   
  RcHm_v2.0_Chr2g0103571  27 AQALEDGKLEIPRTVVRQCGDR--LAQIILIQVSEGAGWGIEL--TKSNRKIWLQKGWPGFAKHYSLEHGSLLLFSSQGDyLHF--G 107
                             66788999***********866..555777788**********..*******************************66654444..7 PP

                             EEEE-S CS
                      B3  94 vkvfrk 99 
                             v++f++
  RcHm_v2.0_Chr2g0103571 108 VQIFKR 113
                             777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MASHGRRNRK GSVFPVTIPS FFVIVLAQAL EDGKLEIPRT VVRQCGDRLA QIILIQVSEG  60
AGWGIELTKS NRKIWLQKGW PGFAKHYSLE HGSLLLFSSQ GDYLHFGVQI FKRNTLEINY  120
PPLEMNYPPN SSSTVEMNPA SGSSHDDSAD AYADNDDNDA DDEDDDNDDA DDGGANDGDA  180
GSNEDVTTSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein