PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0104701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 380aa    MW: 42342.3 Da    PI: 6.3306
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0104701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1054.4e-33235290156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  RcHm_v2.0_Chr2g0104701 235 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 290
                             79****************************************************97 PP
2Myb_DNA-binding46.96.5e-15237288148
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r  W++e++ ++vda +qlGg    t+k I + m+  g+t  ++ks++qky+
  RcHm_v2.0_Chr2g0104701 237 RRCWSPELHRRFVDALQQLGGSqvaTPKQIRELMQvDGLTNDEVKSHLQKYR 288
                             568*****************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    
MELSLDSNRV FVPKTISEFL SQVSAVKDGA QRSLKLEEYV KRLEDEMRKI EVFKRELPLC  60
MVILKDAIER LKEEVMQCGK VEDRAVIEEF IPLKKKDENE GVVSEKENSD MKSWMSSAQL  120
WSTNINVDYS NSGLKMRNED DDRSVPENPI EISNKRSRGG AFVPFKGNYE SGFARTCVKE  180
DKEVSQVPSL SLMTPTSELG GFNNANSKSS TRGGSGPSLA KLQIEHQQQQ QCFRKQRRCW  240
SPELHRRFVD ALQQLGGSQV ATPKQIRELM QVDGLTNDEV KSHLQKYRLH VRKVPASSAG  300
EASGLWMNQD HCGDHSKANT SQSGSPQGPL LGMEFAKGGQ STTGGNSTET EEDDQNSDGH  360
SWKGARHNSG GDVESCTNPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.14e-67G2-like family protein