PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0104741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 1145aa MW: 129777 Da PI: 7.0175

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0104741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.6e-11	438	463	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++rtG Ck+G C+++H+ RcHm_v2.0_Chr2g0104741 438 PGQPECLFYMRTGDCKFGVDCRYHHP 463 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1145 aa Download sequence
MALSLVLDLI GGEVFQLFSG SVTRAVDRKA AFRDLLQDIK YTLKSLRRQA RVIQQIQQYN 60 LDLSLSNNEI IDIVTQMTKG RELIDCLSGI KFRLWNFCCT NDCAEQLKEL NRALESLFDT 120 LQLEQVRDAK ETLKLARQNH KDLKKMKVML EKILQMIDDP EVKGLLRKLV DQNSGDSMDD 180 ASTSTPTSNS ASGSNTEDEG NGVAQASSSG LVGAAFGLLI DAVIEVKVST KMFRPLLRRL 240 KSTLDCLRPF IEEMAEDKKL LDRPKEKLEN LRIQMENGVE LIHKCSSVCR WTSNKKDKYT 300 NQVFELDERL QGHLSILIME VARDVRETSD LIRNIQKVIN RIEGSDFQGS CDITEPPIPP 360 VELEGLNMQK TSNVKETLVS EVNITEGSGV VQNRLEFKGS CDVLGPSSPT VGLEESKHGR 420 KDLIKETLQR ESVFPKRPGQ PECLFYMRTG DCKFGVDCRY HHPDCVFSPT GLPLQLETMP 480 NFSELSNMSP LIVGLDVHLK ELKRKLLNHG ESSILVLTGP AGCGKSTLAK AFCQDEEVKD 540 KFKDNIFFVT VSKKLSIDLI ALQILCQLKD EVPQVENQVT AVEWLGKFLK EAGQDPLLLV 600 LDDVWHVSEF LDNNNELKTE NLKILVTSRS ELRGFGSPYY INALSEEEAM TLIRRSAFLE 660 DRSSYVPEDI LRKIVKHCKG NALALTVIGR SLCRMPIHIW QKRVEELLKD SSISNCESDL 720 LSCLKISYNA LAENSVLKEC FLDLSLFPEY QRVPADALTD MWAELYGLGE NILPIMNLQE 780 LTTRGLAKLV GTRKEKVEVD GYYSTLCFNM HDIIRELAIH LTSQKPIEQR NRLHIEILGG 840 KLPHWINHLL EQKYQPMKAR LVSISTDEVF SQKWHNMQLP EAEVLVLNFQ TENYALPEFV 900 QNMGNLKVLI VTSCGTLPAF WPVGFLPAQL SNFQLLSSLP NLRTIRLEGI SISSISMHSI 960 QLKSLQKISL FNCRIGQTFS NTSIQLSDAF PNLVETNIDH CNDLVALPGI CDLVNLKKLS 1020 LISCHYLSAL PPKIGKLSKL EVLRLKSCTV LEMLPGSIVK LNKLVFLDLS YCKRLKELPD 1080 VIGLRNLKTI DMRQCSRLQM LPPSFLYLKQ LQEVICDEET EKLWKPLLPR LKNLRIKFRF 1140 REIHF

Sequence ? help Back to Top

Protein Sequence Length: 1145 aa Download sequence

MALSLVLDLI GGEVFQLFSG SVTRAVDRKA AFRDLLQDIK YTLKSLRRQA RVIQQIQQYN  60
LDLSLSNNEI IDIVTQMTKG RELIDCLSGI KFRLWNFCCT NDCAEQLKEL NRALESLFDT  120
LQLEQVRDAK ETLKLARQNH KDLKKMKVML EKILQMIDDP EVKGLLRKLV DQNSGDSMDD  180
ASTSTPTSNS ASGSNTEDEG NGVAQASSSG LVGAAFGLLI DAVIEVKVST KMFRPLLRRL  240
KSTLDCLRPF IEEMAEDKKL LDRPKEKLEN LRIQMENGVE LIHKCSSVCR WTSNKKDKYT  300
NQVFELDERL QGHLSILIME VARDVRETSD LIRNIQKVIN RIEGSDFQGS CDITEPPIPP  360
VELEGLNMQK TSNVKETLVS EVNITEGSGV VQNRLEFKGS CDVLGPSSPT VGLEESKHGR  420
KDLIKETLQR ESVFPKRPGQ PECLFYMRTG DCKFGVDCRY HHPDCVFSPT GLPLQLETMP  480
NFSELSNMSP LIVGLDVHLK ELKRKLLNHG ESSILVLTGP AGCGKSTLAK AFCQDEEVKD  540
KFKDNIFFVT VSKKLSIDLI ALQILCQLKD EVPQVENQVT AVEWLGKFLK EAGQDPLLLV  600
LDDVWHVSEF LDNNNELKTE NLKILVTSRS ELRGFGSPYY INALSEEEAM TLIRRSAFLE  660
DRSSYVPEDI LRKIVKHCKG NALALTVIGR SLCRMPIHIW QKRVEELLKD SSISNCESDL  720
LSCLKISYNA LAENSVLKEC FLDLSLFPEY QRVPADALTD MWAELYGLGE NILPIMNLQE  780
LTTRGLAKLV GTRKEKVEVD GYYSTLCFNM HDIIRELAIH LTSQKPIEQR NRLHIEILGG  840
KLPHWINHLL EQKYQPMKAR LVSISTDEVF SQKWHNMQLP EAEVLVLNFQ TENYALPEFV  900
QNMGNLKVLI VTSCGTLPAF WPVGFLPAQL SNFQLLSSLP NLRTIRLEGI SISSISMHSI  960
QLKSLQKISL FNCRIGQTFS NTSIQLSDAF PNLVETNIDH CNDLVALPGI CDLVNLKKLS  1020
LISCHYLSAL PPKIGKLSKL EVLRLKSCTV LEMLPGSIVK LNKLVFLDLS YCKRLKELPD  1080
VIGLRNLKTI DMRQCSRLQM LPPSFLYLKQ LQEVICDEET EKLWKPLLPR LKNLRIKFRF  1140
REIHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.3	9e-19	C3H family protein