PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 233aa    MW: 25420.7 Da    PI: 8.2093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19135185155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GVr+++  g+W+AeIrdp+    r +r++lg+f t+eeAa+a++  +++++g
  RcHm_v2.0_Chr2g0105221 135 SKYRGVRQRP-GGKWAAEIRDPR----RaARVWLGTFKTEEEAARAYDTKALEFRG 185
                             89********.9*********82....48************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MNTKSNFFGS PHSKIKIRPI RIFGKKIWIS SSQLHLDPKM KSIGTGGLPK EQEHAIIVST  60
LKRVIRGGVG TDNAPSQPPP PSTQLPATGG TDQVVIPFSD CDDTCQVCKM GKEDCLGCGL  120
FPPSEQDTGK KVKTSKYRGV RQRPGGKWAA EIRDPRRAAR VWLGTFKTEE EAARAYDTKA  180
LEFRGADRAK LNFPPSWDTG TTSGAMADET KVQTSPVGES SAAEEEEEEE MDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-27ERF family protein