PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105401
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 242aa    MW: 26673.8 Da    PI: 6.163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-20104155156
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             s+y+GVr+++  g+WvAeIrdp+    r  r++lg+f t+eeAa+a++ a+ +++ge
  RcHm_v2.0_Chr2g0105401 104 SKYRGVRQRS-GGKWVAEIRDPR----RtVRVWLGTFQTEEEAARAYDTAAIEFRGE 155
                             89*****999.9*********83....46*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MKSSGSQMPS HSGGLSKEQE HAIIVSALLR VVRGGTTQPP PPQLHYASSS LPPTGGTGTD  60
QVVIPFSDCD MCQACNMKMD DCLGCGLFPP SEQDKGKGKN MKTSKYRGVR QRSGGKWVAE  120
IRDPRRTVRV WLGTFQTEEE AARAYDTAAI EFRGERAKLN FPLSSEAGTT SAALTTQSTE  180
TGEVNQVDAT SVKSANHEEG QSSDVKDEDI HRFIWEMLKD DHEDLYLSIW AVAEHKCYFW  240
RG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.19e-28ERF family protein