PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 213aa    MW: 23449.2 Da    PI: 5.4687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.9e-18115165155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GVr+++  g+W+AeIrdp+    r  r++lg+f  +eeAa+a++  + +++g
  RcHm_v2.0_Chr2g0105461 115 SKYRGVRQRP-GGKWAAEIRDPR----RsVRVWLGTFQREEEAARAYDTKAMEFRG 165
                             89********.9*********83....36************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MWISSSQLRS DSKMKSNGTE MPSHSGGLPK EQEHAIIVSA LKRVIRGGVG TNNAPSQPPP  60
PPTQLPETGG TDQIVIPFSD CDDTCQVCNM EMDRCLGCGL FPPREQDKGK KVKTSKYRGV  120
RQRPGGKWAA EIRDPRRSVR VWLGTFQREE EAARAYDTKA MEFRGADRAK LNFPPSSDTG  180
TTSGAMTDET KVQTSPVGES STAEEEEEEE MDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-26ERF family protein