PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 250aa    MW: 27618.7 Da    PI: 10.4135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08171211954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  RcHm_v2.0_Chr2g0105811 171 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 211
                             699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MDIDMLKSSS AGHDLHHPHH HMDMMTMMMQ QSPEFYHNTP PTFSEIDFTW GSSITPNNIG  60
TIVPQPMFHN PTSPSQSQPT LLNPNPSSSS VSFLSGANPI HSNPIKQAAA AAGALSIPGT  120
NSYEKRSSMA AMREMIFRIA AMQPIQIDPE AVKPPKRRNV KISKDPQSVA ARHRRERISE  180
RIRILQRLVP GGTKMDTASM LDEAIHYVKF LKKQVQTLER AGADRPVGVG FIGPQLGNVN  240
YSAGSMQMLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-42bHLH family protein