PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0106241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 173aa    MW: 18689 Da    PI: 7.9172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0106241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-172271255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  RcHm_v2.0_Chr2g0106241 22 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 71
                            69*****99.**********9...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MEGQEAAAAA AANRKRGDND KPYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSTPVAAAR  60
AYDTAVFYLR GPSARLNFPE ALPVVGGGCG CDGDMSAASI RKKATEVGAR VDAVETAMRQ  120
HRAAAAGGPM EEMKPCRAAA AEEEESGFVD RVDLNKMPDP EETDGGVCDW GRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-56ERF family protein