PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0107561
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 248aa    MW: 26828.5 Da    PI: 8.0923
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0107561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.61.4e-312103197
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe +r+ +++sl++eA+ r+ +Pv+Gavg++++
  RcHm_v2.0_Chr2g0107561   2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPEPQRPVLFQSLLFEACGRTVNPVNGAVGLLWT 88 
                             6************************************************************************************** PP

                  DUF260  83 lqqqleqlkaelall 97 
                             +++q++q+++e++l+
  RcHm_v2.0_Chr2g0107561  89 GNWQVCQAAVETVLR 103
                             *********999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPEPQR  60
PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WQVCQAAVET VLRGGTLRPI PELVSGSGSG  120
LTPDEASEAD GTACTDMWRL RDPTHNSGSS SRFTNSRSKA ASCSPTTKRK RPDDESLKVL  180
QHADLDLRLT PTLLAFRPKP KPETRRPGSP SMNSEESVVT TCFESAGFAE QYPNPNGGSE  240
IKLLSLFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-85LBD family protein