PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0109131

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 359aa MW: 39936.7 Da PI: 7.5688

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0109131	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.8e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ ++G+g +W + ++++g++R++k+c++rw++yl RcHm_v2.0_Chr2g0109131 14 KGPWSPEEDAKLKSYIDKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38	3.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr2g0109131 69 GGFSEEEDNIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGKAPCCDKT KVKKGPWSPE EDAKLKSYID KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQAQNR KAAASLKQEI KRSSTTTNFH LPPDDFVNQV NPYWAPELPV VLPVMSYQTH 180 DAQVLDDHQA SIKNMLIKLG GRFSDTTNSM YSPIDHISST SSHQFYQNSG IDHMLACSPA 240 ANSNYAQLGP SPSPSPTMFH GVDHQSDLEA ELSELIFGNS QPHQQYDGLA GFYQMETLNN 300 GSTGVTTSTS AESEISWGDI SSLVYSTTTP LVSEYENSCQ QGVRPSDSAF AESTYFGMK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGKAPCCDKT KVKKGPWSPE EDAKLKSYID KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQAQNR KAAASLKQEI KRSSTTTNFH LPPDDFVNQV NPYWAPELPV VLPVMSYQTH  180
DAQVLDDHQA SIKNMLIKLG GRFSDTTNSM YSPIDHISST SSHQFYQNSG IDHMLACSPA  240
ANSNYAQLGP SPSPSPTMFH GVDHQSDLEA ELSELIFGNS QPHQQYDGLA GFYQMETLNN  300
GSTGVTTSTS AESEISWGDI SSLVYSTTTP LVSEYENSCQ QGVRPSDSAF AESTYFGMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	5e-80	MYB family protein