PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0109981
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23212 Da    PI: 6.5227
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0109981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13e-201362251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            +ie  s rqvtfskRr+g++ KAe  S  C+ae+avi+fs+t ++ye+ss
  RcHm_v2.0_Chr2g0109981 13 KIEHLSSRQVTFSKRRKGLFNKAEDFSLRCGAEIAVIVFSNTKRMYEFSS 62
                            79999*******************************************96 PP
2K-box35.34.8e-131001541872
                   K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                                +  L++ei+ L     +l G +L+ +sl+eL++Le+++ ++++++ ++Kne+
  RcHm_v2.0_Chr2g0109981 100 LSAIGLLQEEIRALNLDCSRLTGTELDGMSLRELNELEKKIREGIESVEKRKNEV 154
                             4566789********999***********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MAMSGPRRTK IEKIEHLSSR QVTFSKRRKG LFNKAEDFSL RCGAEIAVIV FSNTKRMYEF  60
SSTSMEHILS RYNKERAAGF LIESPENKSQ HEPSSSSDSL SAIGLLQEEI RALNLDCSRL  120
TGTELDGMSL RELNELEKKI REGIESVEKR KNEVQNYYQP SYMLEDSNRL DGNNSNFFSG  180
TSSSAISGCT ESEQSKQFVD TCLHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-30MIKC_MADS family protein