PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0110101
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 21891.8 Da    PI: 10.6074
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0110101genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.54.7e-251057249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            ri+n + rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye 
  RcHm_v2.0_Chr2g0110101 10 RIDNCTSRQVTFSKRRKGLIKKAKELAILCDAEVGLLIFSSTGKLYEC 57
                            8*********************************************95 PP
2K-box60.76e-21591331791
                   K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             +++e++ L+++++nL++++R+++Ge+L+ L++keL+ Le+qLe sl+ iR kK +++++q  el kk  +l+ ++
  RcHm_v2.0_Chr2g0110101  59 SNREVTLLREQLQNLRENHRQFMGEQLGGLTIKELKGLENQLEISLQGIRLKKGNFIHQQNMELYKKVINLSFQE 133
                             5789****************************************************************9997544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MGRGKIVIRR IDNCTSRQVT FSKRRKGLIK KAKELAILCD AEVGLLIFSS TGKLYECASN  60
REVTLLREQL QNLRENHRQF MGEQLGGLTI KELKGLENQL EISLQGIRLK KGNFIHQQNM  120
ELYKKVINLS FQEKLELKKK NIYSALVRTC NFRLMELKIP SFINSYGFHN FLIQTHRQEI  180
IRPHYLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-56MIKC_MADS family protein