PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0111271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25957.3 Da    PI: 7.6685
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0111271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+i+n + rqvtfskRr g+lKKAeELSvLCda++a+iifsstgkl+ey+s
  RcHm_v2.0_Chr2g0111271  9 KKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                            68***********************************************86 PP
2K-box516.1e-18921721999
                   K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              ++++L kei    +++R++ Ge+L+ L+l+eLqqLe+ Le++l ++ +kK e ++++i elqk   +l een++Lr+++ 
  RcHm_v2.0_Chr2g0111271  92 SNYSRLSKEIAAKSHQLRQMRGEELHGLKLEELQQLENSLESGLGRVIEKKGEKIMTEITELQKNAVQLIEENERLRQQVV 172
                             67999*************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAREKIQIKK IDNATARQVT FSKRRRGLLK KAEELSVLCD ADIALIIFSS TGKLFEYASS  60
SMKEILERHR LHSKNLGKLE QPSLELQLVE NSNYSRLSKE IAAKSHQLRQ MRGEELHGLK  120
LEELQQLENS LESGLGRVIE KKGEKIMTEI TELQKNAVQL IEENERLRQQ VVERTDGRRR  180
HVHADSENRI TEEGQSSESV TNLCNSNNAP QDYDSSDTSL KLGLPYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-100MIKC_MADS family protein