PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0111351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 207aa    MW: 23091.1 Da    PI: 10.855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0111351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-114894354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            ++h+e ErrRR riNs +  Lr++lP++      K++Ka++L ++v+ +++L
  RcHm_v2.0_Chr2g0111351 48 KKHSESERRRRMRINSQYTALRKILPNL-----IKMDKASVLAETVRQVREL 94
                            68*************************9.....6************988877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MQMRSAPSYF SKQIGFHQRY RIDPVNSIYR KNFCRPKSTA EAKVLAAKKH SESERRRRMR  60
INSQYTALRK ILPNLIKMDK ASVLAETVRQ VRELKKVVAD TEAACRGSGS ECVIPSGVNK  120
LSLEKCEGKQ EGLVKATFSC EDRPGLILDM IRELRSGKGR VVRAEMVTVG GRTKSVLWVK  180
GLGAGSEGIV CLKKALNKVI VDRPSII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.12e-40bHLH family protein