PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0111751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HB-other
Protein Properties Length: 71aa    MW: 8259.48 Da    PI: 9.0785
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0111751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox391.3e-121869551
                            SS--HHHH.HHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
                Homeobox  5 ttftkeql.eeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51
                             ++++eq+ e+Le+l+++ ++ps  +r++L k+     +++ +q+kvWFqNr
  RcHm_v2.0_Chr2g0111751 18 VRYKPEQVaEALERLYHEFPKPSSISRQQLIKEYpiipNIEPSQIKVWFQNR 69
                            66778876378****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MAMSCTDGKG VMDNGKYVRY KPEQVAEALE RLYHEFPKPS SISRQQLIKE YPIIPNIEPS  60
QIKVWFQNRS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.13e-33HD-ZIP family protein