PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0113081

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 130aa MW: 15439.6 Da PI: 9.7167

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0113081	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	118	4.7e-37	4	89	31	116
CG-1 31 ktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 +r gsl+L +rkkv+++++DG++w+kkkdgktv E ekLKvg v l cyYa +een++f+rr+y +Lee+l++ivlvhy+e RcHm_v2.0_Chr2g0113081 4 SQRLLGGSLFLVDRKKVKHYKRDGHNWRKKKDGKTVMEGNEKLKVGHVHKLRCYYAPGEENKNFKRRIYSMLEEDLKHIVLVHYRE 89 577889******************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence
MAESQRLLGG SLFLVDRKKV KHYKRDGHNW RKKKDGKTVM EGNEKLKVGH VHKLRCYYAP 60 GEENKNFKRR IYSMLEEDLK HIVLVHYREE ESTSGVLLFN GTFLWHVYLL GMENNHESET 120 NGMGEERNRY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	34	RKKVKHYKRDGHNWRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	2e-34	CAMTA family protein