PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0113111

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 347aa MW: 38490.3 Da PI: 6.1489

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0113111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24	9.9e-08	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H RcHm_v2.0_Chr2g0113111 130 HYCEICGKGFKRDANLRMHMRAH 152 68*******************99 PP
2	zf-C2H2	10.7	0.0017	223	246	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + RcHm_v2.0_Chr2g0113111 223 YSCNRCNkKSFSVVADLKSHLKHC 246 99*******************977 PP
3	zf-C2H2	13.4	0.00024	254	270	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrks L H+ RcHm_v2.0_Chr2g0113111 254 TCGTSFSRKSKLFGHMA 270 6**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MSFPGQSLQF PTAYYSDDPD PRVPLQNLDS VRTRMDSLQL FLTQSINNNA LITPHQMDMV 60 SAGISSAIHE IISNGAALLA CSRISRPDPT RKPEVKKEEE NNEDDDGVVD GGDSEIVEVD 120 AVELLAEHIH YCEICGKGFK RDANLRMHMR AHGNQFKTPE ALAKPEKIAG VGGEVYTGGG 180 RNTRFSCPYV GCNRNKGHAK FRALKSVICV KNHFKRSHCP KMYSCNRCNK KSFSVVADLK 240 SHLKHCGEAR WRCTCGTSFS RKSKLFGHMA LFEGHMPAVE DDNNGAGSCL VTAMEEEEED 300 GEERHRTASW NGEGSRPIYE DIDFSEELFS GLGSIGGFCL EDMFVDL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MSFPGQSLQF PTAYYSDDPD PRVPLQNLDS VRTRMDSLQL FLTQSINNNA LITPHQMDMV  60
SAGISSAIHE IISNGAALLA CSRISRPDPT RKPEVKKEEE NNEDDDGVVD GGDSEIVEVD  120
AVELLAEHIH YCEICGKGFK RDANLRMHMR AHGNQFKTPE ALAKPEKIAG VGGEVYTGGG  180
RNTRFSCPYV GCNRNKGHAK FRALKSVICV KNHFKRSHCP KMYSCNRCNK KSFSVVADLK  240
SHLKHCGEAR WRCTCGTSFS RKSKLFGHMA LFEGHMPAVE DDNNGAGSCL VTAMEEEEED  300
GEERHRTASW NGEGSRPIYE DIDFSEELFS GLGSIGGFCL EDMFVDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	1e-68	C2H2 family protein