PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0113131

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 349aa MW: 38630.3 Da PI: 5.8979

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0113131	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++++G g+W++ ++ g++R++k+c++rw +yl RcHm_v2.0_Chr2g0113131 14 KGPWTPEEDQKLMNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.8	1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l RcHm_v2.0_Chr2g0113131 67 RGKFSQEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGRSPCCDDS GLKKGPWTPE EDQKLMNYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFSSLPHLL ALVNLKDLID QGSSQTSWDE QALRLQAEAA QMAKIQYLQY 180 LLQPQASTSN NLSDFTDMET IGLLNSLCSS IKDVNPVFGS SQLETSAQYL GSSSVQDSIP 240 FSPLPDLQMV PSSAYQKDVI INQAPDQFTV VSQLDNSPNN NSWNIPSSSN TSTPSPPSVA 300 VPPVTETSTS NNNMGDACST TTSSYGGVAT ISAWSDLLLE DYPFFNEIS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGRSPCCDDS GLKKGPWTPE EDQKLMNYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLL ALVNLKDLID QGSSQTSWDE QALRLQAEAA QMAKIQYLQY  180
LLQPQASTSN NLSDFTDMET IGLLNSLCSS IKDVNPVFGS SQLETSAQYL GSSSVQDSIP  240
FSPLPDLQMV PSSAYQKDVI INQAPDQFTV VSQLDNSPNN NSWNIPSSSN TSTPSPPSVA  300
VPPVTETSTS NNNMGDACST TTSSYGGVAT ISAWSDLLLE DYPFFNEIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-106	MYB family protein