PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0113261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family CAMTA
Protein Properties Length: 151aa    MW: 18004.8 Da    PI: 8.5801
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0113261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1138.32.5e-43191311118
                    CG-1   1 llkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 
                             ll+ k+rwl++ ei ++L+n++++   +e++++p+s   + ++   +  frkDGy wkk kdgk+v+E+he+LK ggve+l+cyYah
  RcHm_v2.0_Chr2g0113261  19 LLQAKHRWLRPAEIFEVLQNHSRFC-LSEPADKPSS---MTFDCICMS-FRKDGYRWKKTKDGKAVKEAHERLKAGGVEALHCYYAH 100
                             56789******************98.5688888876...557877777.************************************** PP

                    CG-1  88 seenptfqrrcywlLeeelekivlvhylevk 118
                             +een++fqrrcyw++ee l++ivlvhy+evk
  RcHm_v2.0_Chr2g0113261 101 GEENENFQRRCYWMIEEPLSHIVLVHYREVK 131
                             ****************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MAARKRQRLD DQLELPQILL QAKHRWLRPA EIFEVLQNHS RFCLSEPADK PSSMTFDCIC  60
MSFRKDGYRW KKTKDGKAVK EAHERLKAGG VEALHCYYAH GEENENFQRR CYWMIEEPLS  120
HIVLVHYREV KVTHPSYSVP NYLLCFLYQL F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.22e-49CAMTA family protein