PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0115041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 349aa    MW: 38754.2 Da    PI: 5.869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0115041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20153202255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+g
  RcHm_v2.0_Chr2g0115041 153 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDKAAYKLRG 202
                             59******9.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MAAAVDIYSS SSSMSPDLSE ELMRALMPCM NSASSTSSIS PPTSPSTSYY SSSSYTPFYS  60
SYPNLYSDFC SNTQMFPQVG FEQTGSLGLN QLTPSQIRQI ETQMILQQQQ KQQIAALAPL  120
PNQYHHQHSH TLNFLGPKAI PMKQSGTPKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL  180
GTFETAEEAA LAYDKAAYKL RGDFARLNFP HLKHQGAHIT GDFGNYKPLP SAVDAKLQAI  240
CESLAVNSPK QGKTEELCSE AETKPVISAP KMVFDDSSST DLKREWDSPK LEAISWSSSP  300
SRSCDESSAG SSSPESDITF LDFSDSQWDE NDTFGLEKYP SVEIDWSAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-58ERF family protein