PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0115111
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family EIL
Protein Properties Length: 156aa    MW: 17902.6 Da    PI: 8.9197
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0115111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3181.77.2e-561131152281
                             SSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT- CS
                    EIN3 152 mqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkm 238
                             mqhc+ppqrrfplekg++pPWWP+G+e wwge+g+s+++g+ppy+kphdlkkaw vs L+avikhm p+++++r+l+ qsk+lqdkm
  RcHm_v2.0_Chr2g0115111   1 MQHCKPPQRRFPLEKGLAPPWWPNGNEIWWGEQGVSQEHGPPPYRKPHDLKKAWIVSSLAAVIKHMVPNLDRVRRLVKQSKCLQDKM 87 
                             8************************************************************************************** PP

                             -SHHHHHHHHHHTTTTT-S--XXXXXX.XXXXXXXXXXXXXXXX CS
                    EIN3 239 sakesfallsvlnqeekecatvsahss.slrkqspkvtlsceqk 281
                             +ake++++++v+nqee++++ +  +++ s+ + +  + l++++k
  RcHm_v2.0_Chr2g0115111  88 TAKETAIWSKVVNQEEAILQLITDQKPiSCPEIAGTTALHSNEK 131
                             ****************9775555444444444344444444443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MQHCKPPQRR FPLEKGLAPP WWPNGNEIWW GEQGVSQEHG PPPYRKPHDL KKAWIVSSLA  60
AVIKHMVPNL DRVRRLVKQS KCLQDKMTAK ETAIWSKVVN QEEAILQLIT DQKPISCPEI  120
AGTTALHSNE KRKCMFDDDC SELDRCSTCS SKNFKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.13e-60EIL family protein