PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0116041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 235aa    MW: 27294 Da    PI: 9.629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0116041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-17855148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEdell ++++++G g W+ ++ + g++R++k+c++rw++yl
  RcHm_v2.0_Chr2g0116041  8 KGAWTKEEDELLRQVIEKHGEGKWHQVPFKAGLNRCRKSCRLRWLNYL 55
                            79********************************************97 PP
2Myb_DNA-binding482.9e-1561105147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg +T +E + +++++k+lG++ W++I+ +++ gRt++++k++w++y
  RcHm_v2.0_Chr2g0116041  61 RGEFTVDEVDMIIRLHKLLGNR-WSLISGRLP-GRTANDVKNYWNTY 105
                             899*******************.*********.************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MEGFGVRKGA WTKEEDELLR QVIEKHGEGK WHQVPFKAGL NRCRKSCRLR WLNYLKPNIK  60
RGEFTVDEVD MIIRLHKLLG NRWSLISGRL PGRTANDVKN YWNTYQRKKN QKMTSGAKKM  120
KDKSQKNTIA PLVVRPRPRT FIKSLNFLER DANLEHIHSE ENSSTSLPTA PPQTLELENV  180
IDWWKVVSED STGSIDRTTC SSLGLEDDFF TNFWVEDMVQ LSTIDGHDLV NNFYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-62MYB family protein