PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0116071

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 218aa MW: 25553.2 Da PI: 10.4936

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0116071	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.3e-16	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll +++ +G g+W++++ g++R++k+c+ rw++yl RcHm_v2.0_Chr2g0116071 5 KGSWTKEEDQLLRNYIDTHGEGRWHKVPFQAGLNRCRKSCRMRWLNYL 52 799*******************************************97 PP
2	Myb_DNA-binding	37.3	6.2e-12	58	99	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 rg + ++E +l +++ k+lG++ W++Iar+++ gRt +++k++w RcHm_v2.0_Chr2g0116071 58 RGDFVEDEVDLMIRLRKLLGNR-WSLIARRLP-GRTSNDVKNYW 99 6788899*************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MEVRKGSWTK EEDQLLRNYI DTHGEGRWHK VPFQAGLNRC RKSCRMRWLN YLKPNIKRGD 60 FVEDEVDLMI RLRKLLGNRW SLIARRLPGR TSNDVKNYWS ARRRRDIDFG IMKNNKPPKI 120 TKNTVIRPRP RIFTKSLHYL SARPATSKPI ELAGNSSSSI SPPIQNEVDE WKTLLEGDVL 180 TNFWVEDLAS ISSTIGVNST EQGFEMDLWH FLQEEARQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	6e-54	MYB family protein